IL_9AX8_074

3D structure

PDB id

9AX8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1, initiation factor 2 + CUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9AX8_074 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0971

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

9AX8|1|A|U|1851
9AX8|1|A|U|1852
9AX8|1|A|A|1853
9AX8|1|A|A|1854
9AX8|1|A|U|1855
9AX8|1|A|U|1856
9AX8|1|A|G|1857
9AX8|1|A|A|1858
9AX8|1|A|U|1859
9AX8|1|A|G|1860
*
9AX8|1|A|U|1882
9AX8|1|A|U|1883
9AX8|1|A|G|1884
9AX8|1|A|A|1885
9AX8|1|A|U|1886
9AX8|1|A|C|1887
9AX8|1|A|G|1888
9AX8|1|A|A|1889
9AX8|1|A|A|1890
9AX8|1|A|G|1891

Current chains

Chain A

23S ribosomal RNA

Nearby chains