IL_9AX8_145

3D structure

PDB id

9AX8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex (tRNA-fMet M1, initiation factor 2 + CUG start codon)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGGAG*UC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9AX8_145 not in the Motif Atlas

Homologous match to IL_4LFB_032

Geometric discrepancy: 0.0754

The information below is about IL_4LFB_032

Detailed Annotation

Left turn

Broad Annotation

Left turn

Motif group

IL_29346.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

9AX8|1|a|G|774
9AX8|1|a|G|775
9AX8|1|a|G|776
9AX8|1|a|A|777
9AX8|1|a|G|778
*
9AX8|1|a|U|804
9AX8|1|a|C|805

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain 9

50S ribosomal protein L2

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain k

30S ribosomal protein S11