IL_9AXU_015

3D structure

PDB id

9AXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-translating S. pombe ribosome large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.94 Å

Loop

Sequence

GUGAAAU*ACGGAUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22311.1

Basepair signature

cWW-cWW-tSH-tHS-tHS-L-R-cWW

Number of instances in this motif group

10

Unit IDs

9AXU|1|2|G|412
9AXU|1|2|U|413
9AXU|1|2|G|414
9AXU|1|2|A|415
9AXU|1|2|A|416
9AXU|1|2|A|417
9AXU|1|2|U|418
*
9AXU|1|4|A|21
9AXU|1|4|C|22
9AXU|1|4|G|23
9AXU|1|4|G|24
9AXU|1|4|A|25
9AXU|1|4|U|26
9AXU|1|4|C|27

Current chains

Chain 2

28S ribosomal RNA

Chain 4

5.8S ribosomal RNA

Nearby chains

Chain P

Large ribosomal subunit protein uL4A

Chain b

Large ribosomal subunit protein uL22A

Chain q

Large ribosomal subunit protein eL32A