IL_9AXU_029

3D structure

PDB id

9AXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-translating S. pombe ribosome large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.94 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15190.1

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

22

Unit IDs

9AXU|1|2|U|866
9AXU|1|2|G|867
9AXU|1|2|A|868
9AXU|1|2|A|869
9AXU|1|2|G|870
*
9AXU|1|2|U|887
9AXU|1|2|G|888
9AXU|1|2|G|889
9AXU|1|2|A|890
9AXU|1|2|G|891

Current chains

Chain 2

28S ribosomal RNA

Nearby chains

Chain 1

Large ribosomal subunit protein eL43A

Chain N

Large ribosomal subunit protein uL2C

Chain d

Large ribosomal subunit protein eL19B