IL_9AXU_039

3D structure

PDB id

9AXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-translating S. pombe ribosome large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.94 Å

Loop

Sequence

GCGAAU*AAAC

Length

10 nucleotides

Bulged bases

9AXU|1|2|G|1033

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_16301.1

Basepair signature

cWW-cWS-tWH-R-L-R-cWW

Number of instances in this motif group

9

Unit IDs

9AXU|1|2|G|1031
9AXU|1|2|C|1032
9AXU|1|2|G|1033
9AXU|1|2|A|1034
9AXU|1|2|A|1035
9AXU|1|2|U|1036
*
9AXU|1|2|A|1078
9AXU|1|2|A|1079
9AXU|1|2|A|1080
9AXU|1|2|C|1081

Current chains

Chain 2

28S ribosomal RNA

Nearby chains

Chain 3

5S ribosomal RNA; 5S rRNA

Chain Q

Large ribosomal subunit protein uL18B

Chain V

Large ribosomal subunit protein uL16A

Chain f

Large ribosomal subunit protein eL21B