IL_9AXU_046

3D structure

PDB id

9AXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-translating S. pombe ribosome large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.94 Å

Loop

Sequence

UGCCGGAA*UA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07396.1

Basepair signature

cWW-L-cWW-L-L-R-cHH

Number of instances in this motif group

3

Unit IDs

9AXU|1|2|U|1204
9AXU|1|2|G|1205
9AXU|1|2|C|1206
9AXU|1|2|C|1207
9AXU|1|2|G|1208
9AXU|1|2|G|1209
9AXU|1|2|A|1210
9AXU|1|2|A|1211
*
9AXU|1|2|U|1356
9AXU|1|2|A|1357

Current chains

Chain 2

28S ribosomal RNA

Nearby chains

Chain S

Large ribosomal subunit protein uL30C

Chain a

Large ribosomal subunit protein uL13A

Chain e

Large ribosomal subunit protein eL20A

Chain r

Large ribosomal subunit protein eL33A