IL_9AXU_055

3D structure

PDB id

9AXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-translating S. pombe ribosome large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.94 Å

Loop

Sequence

UGACGAAG*UCGAA

Length

13 nucleotides

Bulged bases

9AXU|1|2|C|1425

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

9AXU|1|2|U|1422
9AXU|1|2|G|1423
9AXU|1|2|A|1424
9AXU|1|2|C|1425
9AXU|1|2|G|1426
9AXU|1|2|A|1427
9AXU|1|2|A|1428
9AXU|1|2|G|1429
*
9AXU|1|2|U|1449
9AXU|1|2|C|1450
9AXU|1|2|G|1451
9AXU|1|2|A|1452
9AXU|1|2|A|1453

Current chains

Chain 2

28S ribosomal RNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain P

Large ribosomal subunit protein uL4A

Chain k

Large ribosomal subunit protein uL24

Chain q

Large ribosomal subunit protein eL32A