IL_9AXU_057

3D structure

PDB id

9AXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-translating S. pombe ribosome large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.94 Å

Loop

Sequence

GAAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02666.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

9AXU|1|2|G|1478
9AXU|1|2|A|1479
9AXU|1|2|A|1480
9AXU|1|2|G|1481
9AXU|1|2|U|1482
9AXU|1|2|A|1483
9AXU|1|2|G|1484
*
9AXU|1|2|C|2442
9AXU|1|2|G|2443
9AXU|1|2|A|2444
9AXU|1|2|A|2445
9AXU|1|2|A|2446
9AXU|1|2|C|2447

Current chains

Chain 2

28S ribosomal RNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain P

Large ribosomal subunit protein uL4A

Chain b

Large ribosomal subunit protein uL22A