IL_9AXU_073

3D structure

PDB id

9AXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-translating S. pombe ribosome large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.94 Å

Loop

Sequence

GGAAGUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

9AXU|1|2|G|1953
9AXU|1|2|G|1954
9AXU|1|2|A|1955
9AXU|1|2|A|1956
9AXU|1|2|G|1957
9AXU|1|2|U|1958
9AXU|1|2|C|1959
9AXU|1|2|G|1960
9AXU|1|2|G|1961
*
9AXU|1|2|C|2421
9AXU|1|2|U|2422
9AXU|1|2|G|2423
9AXU|1|2|U|2424
9AXU|1|2|C|2425

Current chains

Chain 2

28S ribosomal RNA

Nearby chains

Chain O

Large ribosomal subunit protein uL3A

Chain h

Large ribosomal subunit protein uL14B