IL_9AXU_079

3D structure

PDB id

9AXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-translating S. pombe ribosome large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.94 Å

Loop

Sequence

CGAUGG*UGUUGACG

Length

14 nucleotides

Bulged bases

9AXU|1|2|U|2247, 9AXU|1|2|U|2263, 9AXU|1|2|C|2267

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14684.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

4

Unit IDs

9AXU|1|2|C|2244
9AXU|1|2|G|2245
9AXU|1|2|A|2246
9AXU|1|2|U|2247
9AXU|1|2|G|2248
9AXU|1|2|G|2249
*
9AXU|1|2|U|2261
9AXU|1|2|G|2262
9AXU|1|2|U|2263
9AXU|1|2|U|2264
9AXU|1|2|G|2265
9AXU|1|2|A|2266
9AXU|1|2|C|2267
9AXU|1|2|G|2268

Current chains

Chain 2

28S ribosomal RNA

Nearby chains

Chain 1

Large ribosomal subunit protein eL43A

Chain N

Large ribosomal subunit protein uL2C