IL_9AXU_090

3D structure

PDB id

9AXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-translating S. pombe ribosome large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.94 Å

Loop

Sequence

AUGAAGC*GCGU

Length

11 nucleotides

Bulged bases

9AXU|1|2|G|2618, 9AXU|1|2|A|2620, 9AXU|1|2|G|2621, 9AXU|1|2|C|2680, 9AXU|1|2|G|2681

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52092.1

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

4

Unit IDs

9AXU|1|2|A|2616
9AXU|1|2|U|2617
9AXU|1|2|G|2618
9AXU|1|2|A|2619
9AXU|1|2|A|2620
9AXU|1|2|G|2621
9AXU|1|2|C|2622
*
9AXU|1|2|G|2679
9AXU|1|2|C|2680
9AXU|1|2|G|2681
9AXU|1|2|U|2682

Current chains

Chain 2

28S ribosomal RNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain N

Large ribosomal subunit protein uL2C

Chain T

Large ribosomal subunit protein eL8

Chain j

Large ribosomal subunit protein uL23A