IL_9AXU_115

3D structure

PDB id

9AXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-translating S. pombe ribosome large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

1.94 Å

Loop

Sequence

UAAAAAUAGAGGUAGGAC*GUUCCUACUCUCCUGUA

Length

35 nucleotides

Bulged bases

9AXU|1|2|A|3275, 9AXU|1|2|A|3281, 9AXU|1|2|U|3286, 9AXU|1|2|A|3287, 9AXU|1|2|U|3295, 9AXU|1|2|C|3298, 9AXU|1|2|U|3302, 9AXU|1|2|C|3305, 9AXU|1|2|C|3306, 9AXU|1|2|U|3307, 9AXU|1|2|U|3309

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9AXU|1|2|U|3274
9AXU|1|2|A|3275
9AXU|1|2|A|3276
9AXU|1|2|A|3277
9AXU|1|2|A|3278
9AXU|1|2|A|3279
9AXU|1|2|U|3280
9AXU|1|2|A|3281
9AXU|1|2|G|3282
9AXU|1|2|A|3283
9AXU|1|2|G|3284
9AXU|1|2|G|3285
9AXU|1|2|U|3286
9AXU|1|2|A|3287
9AXU|1|2|G|3288
9AXU|1|2|G|3289
9AXU|1|2|A|3290
9AXU|1|2|C|3291
*
9AXU|1|2|G|3294
9AXU|1|2|U|3295
9AXU|1|2|U|3296
9AXU|1|2|C|3297
9AXU|1|2|C|3298
9AXU|1|2|U|3299
9AXU|1|2|A|3300
9AXU|1|2|C|3301
9AXU|1|2|U|3302
9AXU|1|2|C|3303
9AXU|1|2|U|3304
9AXU|1|2|C|3305
9AXU|1|2|C|3306
9AXU|1|2|U|3307
9AXU|1|2|G|3308
9AXU|1|2|U|3309
9AXU|1|2|A|3310

Current chains

Chain 2

28S ribosomal RNA

Nearby chains

Chain R

Large ribosomal subunit protein eL6

Chain U

Large ribosomal subunit protein uL6B

Chain Y

Large ribosomal subunit protein eL14

Chain a

Large ribosomal subunit protein uL13A

Chain e

Large ribosomal subunit protein eL20A