IL_9AZC_013

3D structure

PDB id

9AZC (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (Consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

GCUCGUGG*CGGC

Length

12 nucleotides

Bulged bases

9AZC|1|L5|C|183, 9AZC|1|L5|G|186, 9AZC|1|L5|G|188

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9AZC|1|L5|G|182
9AZC|1|L5|C|183
9AZC|1|L5|U|184
9AZC|1|L5|C|185
9AZC|1|L5|G|186
9AZC|1|L5|U|187
9AZC|1|L5|G|188
9AZC|1|L5|G|189
*
9AZC|1|L5|C|252
9AZC|1|L5|G|253
9AZC|1|L5|G|254
9AZC|1|L5|C|255

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LL

Large ribosomal subunit protein eL13

Chain Lj

60S ribosomal protein L37