IL_9AZC_026

3D structure

PDB id

9AZC (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (Consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

GG*CGACC

Length

7 nucleotides

Bulged bases

9AZC|1|L5|G|666, 9AZC|1|L5|A|667

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9AZC_026 not in the Motif Atlas

Geometric match to IL_5ML7_009

Geometric discrepancy: 0.3603

The information below is about IL_5ML7_009

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.2

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

62

Unit IDs

9AZC|1|L5|G|487
9AZC|1|L5|G|488
*
9AZC|1|L5|C|665
9AZC|1|L5|G|666
9AZC|1|L5|A|667
9AZC|1|L5|C|668
9AZC|1|L5|C|669

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain Lr

60S ribosomal protein L28