IL_9AZC_065

3D structure

PDB id

9AZC (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (Consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

CUCGCAGACCCGACGCCCGCCACG*CG

Length

26 nucleotides

Bulged bases

9AZC|1|L5|C|1698, 9AZC|1|L5|C|1702, 9AZC|1|L5|C|1707, 9AZC|1|L5|G|1708, 9AZC|1|L5|C|1718

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9AZC|1|L5|C|1694
9AZC|1|L5|U|1695
9AZC|1|L5|C|1696
9AZC|1|L5|G|1697
9AZC|1|L5|C|1698
9AZC|1|L5|A|1699
9AZC|1|L5|G|1700
9AZC|1|L5|A|1701
9AZC|1|L5|C|1702
9AZC|1|L5|C|1703
9AZC|1|L5|C|1704
9AZC|1|L5|G|1705
9AZC|1|L5|A|1706
9AZC|1|L5|C|1707
9AZC|1|L5|G|1708
9AZC|1|L5|C|1709
9AZC|1|L5|C|1714
9AZC|1|L5|C|1715
9AZC|1|L5|G|1716
9AZC|1|L5|C|1717
9AZC|1|L5|C|1718
9AZC|1|L5|A|1719
9AZC|1|L5|C|1720
9AZC|1|L5|G|1721
*
9AZC|1|L5|C|1841
9AZC|1|L5|G|1842

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LF

60S ribosomal protein L7

Chain LQ

60S ribosomal protein L18

Chain LT

60S ribosomal protein L21

Chain Lb

60S ribosomal protein L29