IL_9AZC_088

3D structure

PDB id

9AZC (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (Consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

CAGUCGAGAGUGGACGGGAGCGGC*GAGCCCCGCGGACGCUACG

Length

43 nucleotides

Bulged bases

9AZC|1|L5|G|2096, 9AZC|1|L5|U|2097, 9AZC|1|L5|C|2255, 9AZC|1|L5|C|2257, 9AZC|1|L5|C|2266, 9AZC|1|L5|U|2267, 9AZC|1|L5|C|2269

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9AZC|1|L5|C|2087
9AZC|1|L5|A|2088
9AZC|1|L5|G|2089
9AZC|1|L5|U|2090
9AZC|1|L5|C|2091
9AZC|1|L5|G|2092
9AZC|1|L5|A|2093
9AZC|1|L5|G|2094
9AZC|1|L5|A|2095
9AZC|1|L5|G|2096
9AZC|1|L5|U|2097
9AZC|1|L5|G|2098
9AZC|1|L5|G|2099
9AZC|1|L5|A|2100
9AZC|1|L5|C|2101
9AZC|1|L5|G|2102
9AZC|1|L5|G|2103
9AZC|1|L5|G|2104
9AZC|1|L5|A|2105
9AZC|1|L5|G|2106
9AZC|1|L5|C|2107
9AZC|1|L5|G|2108
9AZC|1|L5|G|2109
9AZC|1|L5|C|2110
*
9AZC|1|L5|G|2252
9AZC|1|L5|A|2253
9AZC|1|L5|G|2254
9AZC|1|L5|C|2255
9AZC|1|L5|C|2256
9AZC|1|L5|C|2257
9AZC|1|L5|C|2258
9AZC|1|L5|G|2259
9AZC|1|L5|C|2260
9AZC|1|L5|G|2261
9AZC|1|L5|G|2262
9AZC|1|L5|A|2263
9AZC|1|L5|C|2264
9AZC|1|L5|G|2265
9AZC|1|L5|C|2266
9AZC|1|L5|U|2267
9AZC|1|L5|A|2268
9AZC|1|L5|C|2269
9AZC|1|L5|G|2270

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LE

60S ribosomal protein L6

Chain LF

60S ribosomal protein L7

Chain LQ

60S ribosomal protein L18

Chain Lb

60S ribosomal protein L29

Chain Lr

60S ribosomal protein L28