IL_9AZC_110

3D structure

PDB id

9AZC (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (Consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

9AZC|1|L5|G|3839

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9AZC_110 not in the Motif Atlas

Homologous match to IL_8P9A_306

Geometric discrepancy: 0.0661

The information below is about IL_8P9A_306

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28217.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

9AZC|1|L5|A|2850
9AZC|1|L5|G|2851
9AZC|1|L5|U|2852
9AZC|1|L5|C|2853
9AZC|1|L5|G|2854
9AZC|1|L5|G|2855
*
9AZC|1|L5|C|3837
9AZC|1|L5|U|3838
9AZC|1|L5|G|3839
9AZC|1|L5|U|3840

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LV

60S ribosomal protein L23