IL_9AZC_113

3D structure

PDB id

9AZC (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (Consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

GG*CGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9AZC_113 not in the Motif Atlas

Homologous match to IL_8CRE_086

Geometric discrepancy: 0.1702

The information below is about IL_8CRE_086

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73355.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

9AZC|1|L5|G|2896
9AZC|1|L5|G|2897
*
9AZC|1|L5|C|3602
9AZC|1|L5|G|3603
9AZC|1|L5|A|3604
9AZC|1|L5|C|3605

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain S2

Small subunit ribosomal RNA; SSU rRNA