IL_9AZC_116

3D structure

PDB id

9AZC (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (Consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

9AZC|1|L5|A|3828

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9AZC_116 not in the Motif Atlas

Homologous match to IL_8P9A_310

Geometric discrepancy: 0.1257

The information below is about IL_8P9A_310

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

9AZC|1|L5|C|3632
9AZC|1|L5|C|3633
*
9AZC|1|L5|G|3827
9AZC|1|L5|A|3828
9AZC|1|L5|G|3829

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Ln

60S ribosomal protein L41