IL_9AZC_122

3D structure

PDB id

9AZC (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (Consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

UCAAAGU*AAUGAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9AZC_122 not in the Motif Atlas

Homologous match to IL_8P9A_316

Geometric discrepancy: 0.1704

The information below is about IL_8P9A_316

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65359.1

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

4

Unit IDs

9AZC|1|L5|U|3715
9AZC|1|L5|C|3716
9AZC|1|L5|A|3717
9AZC|1|L5|A|3718
9AZC|1|L5|A|3719
9AZC|1|L5|G|3720
9AZC|1|L5|U|3721
*
9AZC|1|L5|A|3732
9AZC|1|L5|A|3733
9AZC|1|L5|U|3734
9AZC|1|L5|G|3735
9AZC|1|L5|A|3736
9AZC|1|L5|A|3737
9AZC|1|L5|G|3738

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Li

60S ribosomal protein L36

Chain Lo

60S ribosomal protein L36a