IL_9AZC_124
3D structure
- PDB id
- 9AZC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human 80S ribosome (Consensus map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.19 Å
Loop
- Sequence
- CCAAAUGCCUCG*CGCG
- Length
- 16 nucleotides
- Bulged bases
- 9AZC|1|L5|A|3785, 9AZC|1|L5|C|3791, 9AZC|1|L5|C|3810
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9AZC_124 not in the Motif Atlas
- Homologous match to IL_8CRE_095
- Geometric discrepancy: 0.0712
- The information below is about IL_8CRE_095
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_42218.2
- Basepair signature
- cWW-L-R-cHW-cWW-L-L-L-R-L
- Number of instances in this motif group
- 5
Unit IDs
9AZC|1|L5|C|3781
9AZC|1|L5|C|3782
9AZC|1|L5|A|3783
9AZC|1|L5|A|3784
9AZC|1|L5|A|3785
9AZC|1|L5|U|3786
9AZC|1|L5|G|3787
9AZC|1|L5|C|3788
9AZC|1|L5|C|3789
9AZC|1|L5|U|3790
9AZC|1|L5|C|3791
9AZC|1|L5|G|3792
*
9AZC|1|L5|C|3808
9AZC|1|L5|G|3809
9AZC|1|L5|C|3810
9AZC|1|L5|G|3811
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain Ln
- 60S ribosomal protein L41
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
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