IL_9AZC_130

3D structure

PDB id

9AZC (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (Consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

GACAUGAG*CUGAUCGUU

Length

17 nucleotides

Bulged bases

9AZC|1|L5|A|3947, 9AZC|1|L5|C|3948, 9AZC|1|L5|A|3949

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9AZC|1|L5|G|3946
9AZC|1|L5|A|3947
9AZC|1|L5|C|3948
9AZC|1|L5|A|3949
9AZC|1|L5|U|3950
9AZC|1|L5|G|3951
9AZC|1|L5|A|3952
9AZC|1|L5|G|3953
*
9AZC|1|L5|C|4059
9AZC|1|L5|U|4060
9AZC|1|L5|G|4061
9AZC|1|L5|A|4062
9AZC|1|L5|U|4063
9AZC|1|L5|C|4064
9AZC|1|L5|G|4065
9AZC|1|L5|U|4066
9AZC|1|L5|U|4067

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Li

60S ribosomal protein L36

Chain SB

40S ribosomal protein S3a