IL_9AZC_149

3D structure

PDB id

9AZC (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (Consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

9AZC|1|L5|A|4548

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9AZC_149 not in the Motif Atlas

Homologous match to IL_8P9A_341

Geometric discrepancy: 0.4721

The information below is about IL_8P9A_341

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

9AZC|1|L5|C|4537
9AZC|1|L5|G|4538
*
9AZC|1|L5|C|4547
9AZC|1|L5|A|4548
9AZC|1|L5|G|4549

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Pt

Transfer RNA; tRNA