IL_9AZC_151

3D structure

PDB id

9AZC (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (Consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

9AZC|1|L5|C|4720

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9AZC_151 not in the Motif Atlas

Geometric match to IL_6YML_002

Geometric discrepancy: 0.328

The information below is about IL_6YML_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

9AZC|1|L5|C|4582
9AZC|1|L5|C|4583
9AZC|1|L5|A|4584
9AZC|1|L5|U|4585
*
9AZC|1|L5|A|4717
9AZC|1|L5|G|4718
9AZC|1|L5|G|4719
9AZC|1|L5|C|4720
9AZC|1|L5|G|4721

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LO

60S ribosomal protein L13a