IL_9AZC_176

3D structure

PDB id

9AZC (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (Consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

CA*UCG

Length

5 nucleotides

Bulged bases

9AZC|1|L7|C|63

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9AZC_176 not in the Motif Atlas

Homologous match to IL_8OI5_134

Geometric discrepancy: 0.1329

The information below is about IL_8OI5_134

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

9AZC|1|L7|C|15
9AZC|1|L7|A|16
*
9AZC|1|L7|U|62
9AZC|1|L7|C|63
9AZC|1|L7|G|64

Current chains

Chain L7

5S rRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain LD

Large ribosomal subunit protein uL18

Chain LI

60S ribosomal protein L10-like

Chain LJ

60S ribosomal protein L11