IL_9AZC_247

3D structure

PDB id

9AZC (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (Consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9AZC_247 not in the Motif Atlas

Homologous match to IL_8P9A_433

Geometric discrepancy: 0.1266

The information below is about IL_8P9A_433

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.2

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

62

Unit IDs

9AZC|1|S2|G|1235
9AZC|1|S2|G|1236
*
9AZC|1|S2|C|1521
9AZC|1|S2|A|1522
9AZC|1|S2|C|1523

Current chains

Chain S2

18S rRNA

Nearby chains

Chain Pt

Transfer RNA; tRNA

Chain SP

Small ribosomal subunit protein uS19

Chain SS

40S ribosomal protein S18