IL_9AZC_271

3D structure

PDB id

9AZC (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (Consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9AZC_271 not in the Motif Atlas

Homologous match to IL_8CRE_468

Geometric discrepancy: 0.0804

The information below is about IL_8CRE_468

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

9AZC|1|S2|G|1706
9AZC|1|S2|U|1707
9AZC|1|S2|C|1708
*
9AZC|1|S2|G|1826
9AZC|1|S2|U|1827
9AZC|1|S2|C|1828

Current chains

Chain S2

18S rRNA

Nearby chains

Chain AT

Transfer RNA; tRNA

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain Ln

60S ribosomal protein L41

Chain Pt

Transfer RNA; tRNA