IL_9AZC_277

3D structure

PDB id

9AZC (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (Consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

UUA*UUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9AZC_277 not in the Motif Atlas

Homologous match to IL_8CRE_473

Geometric discrepancy: 0.0887

The information below is about IL_8CRE_473

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

78

Unit IDs

9AZC|1|S2|U|1729
9AZC|1|S2|U|1730
9AZC|1|S2|A|1731
*
9AZC|1|S2|U|1803
9AZC|1|S2|U|1804
9AZC|1|S2|G|1805

Current chains

Chain S2

18S rRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain LV

60S ribosomal protein L23

Chain SI

40S ribosomal protein S8