IL_9AZC_278

3D structure

PDB id

9AZC (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 80S ribosome (Consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

UGAG*CGAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9AZC_278 not in the Motif Atlas

Homologous match to IL_8CRE_474

Geometric discrepancy: 0.0614

The information below is about IL_8CRE_474

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

9AZC|1|S2|U|1733
9AZC|1|S2|G|1734
9AZC|1|S2|A|1735
9AZC|1|S2|G|1736
*
9AZC|1|S2|C|1798
9AZC|1|S2|G|1799
9AZC|1|S2|A|1800
9AZC|1|S2|A|1801

Current chains

Chain S2

18S rRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain SG

40S ribosomal protein S6

Chain SI

40S ribosomal protein S8