IL_9AZM_001

3D structure

PDB id

9AZM (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human ribosome (Focused on 40S with SERBP1 CTD)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.68 Å

Loop

Sequence

ACCA*UCCCU

Length

9 nucleotides

Bulged bases

9AZM|1|S2|C|1215, 9AZM|1|S2|C|1216

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9AZM_001 not in the Motif Atlas

Homologous match to IL_8P9A_431

Geometric discrepancy: 0.1092

The information below is about IL_8P9A_431

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.12

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

22

Unit IDs

9AZM|1|S2|A|1214
9AZM|1|S2|C|1215
9AZM|1|S2|C|1216
9AZM|1|S2|A|1217
*
9AZM|1|S2|U|1681
9AZM|1|S2|C|1682
9AZM|1|S2|C|1683
9AZM|1|S2|C|1684
9AZM|1|S2|U|1685

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SF

40S ribosomal protein S5

Chain SQ

Small ribosomal subunit protein uS9

Chain Sc

40S ribosomal protein S28