IL_9AZM_002

3D structure

PDB id

9AZM (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human ribosome (Focused on 40S with SERBP1 CTD)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.68 Å

Loop

Sequence

CCU*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9AZM_002 not in the Motif Atlas

Homologous match to IL_8P9A_432

Geometric discrepancy: 0.0986

The information below is about IL_8P9A_432

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

9AZM|1|S2|C|1230
9AZM|1|S2|C|1231
9AZM|1|S2|U|1232
*
9AZM|1|S2|G|1526
9AZM|1|S2|C|1527
9AZM|1|S2|G|1528

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SQ

Small ribosomal subunit protein uS9

Chain SS

40S ribosomal protein S18

Chain ST

40S ribosomal protein S19

Chain SU

40S ribosomal protein S20