IL_9AZM_012
3D structure
- PDB id
- 9AZM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human ribosome (Focused on 40S with SERBP1 CTD)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.68 Å
Loop
- Sequence
- UGG*UCUGUGA
- Length
- 10 nucleotides
- Bulged bases
- 9AZM|1|S2|U|1494, 9AZM|1|S2|G|1497
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9AZM_012 not in the Motif Atlas
- Homologous match to IL_8P9A_440
- Geometric discrepancy: 0.122
- The information below is about IL_8P9A_440
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_34117.1
- Basepair signature
- cWW-L-R-L-cWW-L
- Number of instances in this motif group
- 7
Unit IDs
9AZM|1|S2|U|1333
9AZM|1|S2|G|1334
9AZM|1|S2|G|1335
*
9AZM|1|S2|U|1492
9AZM|1|S2|C|1493
9AZM|1|S2|U|1494
9AZM|1|S2|G|1495
9AZM|1|S2|U|1496
9AZM|1|S2|G|1497
9AZM|1|S2|A|1498
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SD
- Small ribosomal subunit protein uS3
- Chain SK
- 40S ribosomal protein S10
- Chain SU
- 40S ribosomal protein S20
- Chain Sd
- 40S ribosomal protein S29
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