IL_9AZM_017

3D structure

PDB id

9AZM (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human ribosome (Focused on 40S with SERBP1 CTD)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.68 Å

Loop

Sequence

ACUA*UUCU

Length

8 nucleotides

Bulged bases

9AZM|1|S2|C|1403, 9AZM|1|S2|U|1404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9AZM_017 not in the Motif Atlas

Homologous match to IL_8CRE_481

Geometric discrepancy: 0.17

The information below is about IL_8CRE_481

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_78800.2

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

3

Unit IDs

9AZM|1|S2|A|1402
9AZM|1|S2|C|1403
9AZM|1|S2|U|1404
9AZM|1|S2|A|1405
*
9AZM|1|S2|U|1441
9AZM|1|S2|U|1442
9AZM|1|S2|C|1443
9AZM|1|S2|U|1444

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SQ

Small ribosomal subunit protein uS9

Chain SU

40S ribosomal protein S20