IL_9AZM_018

3D structure

PDB id

9AZM (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human ribosome (Focused on 40S with SERBP1 CTD)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.68 Å

Loop

Sequence

UA*UCCCCCA

Length

9 nucleotides

Bulged bases

9AZM|1|S2|C|1434, 9AZM|1|S2|C|1437

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9AZM|1|S2|U|1408
9AZM|1|S2|A|1409
*
9AZM|1|S2|U|1432
9AZM|1|S2|C|1433
9AZM|1|S2|C|1434
9AZM|1|S2|C|1435
9AZM|1|S2|C|1436
9AZM|1|S2|C|1437
9AZM|1|S2|A|1438

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SQ

Small ribosomal subunit protein uS9

Chain SU

40S ribosomal protein S20