IL_9AZM_021
3D structure
- PDB id
- 9AZM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human ribosome (Focused on 40S with SERBP1 CTD)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.68 Å
Loop
- Sequence
- GCUCAGCGUGUGCCUACC*GUAACCCGUUGAACCC
- Length
- 34 nucleotides
- Bulged bases
- 9AZM|1|S2|A|1580, 9AZM|1|S2|C|1581, 9AZM|1|S2|U|1585, 9AZM|1|S2|G|1587
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9AZM|1|S2|G|1541
9AZM|1|S2|C|1542
9AZM|1|S2|U|1543
9AZM|1|S2|C|1544
9AZM|1|S2|A|1545
9AZM|1|S2|G|1546
9AZM|1|S2|C|1547
9AZM|1|S2|G|1548
9AZM|1|S2|U|1549
9AZM|1|S2|G|1550
9AZM|1|S2|U|1551
9AZM|1|S2|G|1552
9AZM|1|S2|C|1553
9AZM|1|S2|C|1554
9AZM|1|S2|U|1555
9AZM|1|S2|A|1556
9AZM|1|S2|C|1557
9AZM|1|S2|C|1558
*
9AZM|1|S2|G|1577
9AZM|1|S2|U|1578
9AZM|1|S2|A|1579
9AZM|1|S2|A|1580
9AZM|1|S2|C|1581
9AZM|1|S2|C|1582
9AZM|1|S2|C|1583
9AZM|1|S2|G|1584
9AZM|1|S2|U|1585
9AZM|1|S2|U|1586
9AZM|1|S2|G|1587
9AZM|1|S2|A|1588
9AZM|1|S2|A|1589
9AZM|1|S2|C|1590
9AZM|1|S2|C|1591
9AZM|1|S2|C|1592
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain CD
- Serbp1
- Chain SD
- Small ribosomal subunit protein uS3
- Chain SF
- 40S ribosomal protein S5
- Chain SK
- 40S ribosomal protein S10
- Chain SQ
- Small ribosomal subunit protein uS9
- Chain ST
- 40S ribosomal protein S19
- Chain SU
- 40S ribosomal protein S20
- Chain SZ
- Small ribosomal subunit protein eS25
- Chain Sd
- 40S ribosomal protein S29
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