IL_9AZN_116
3D structure
- PDB id
- 9AZN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human A/P-P/E state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- CGAAGG*UGUUGACG
- Length
- 14 nucleotides
- Bulged bases
- 9AZN|1|L5|A|3663, 9AZN|1|L5|U|3679, 9AZN|1|L5|C|3683
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9AZN_116 not in the Motif Atlas
- Homologous match to IL_8CRE_088
- Geometric discrepancy: 0.0981
- The information below is about IL_8CRE_088
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_20047.1
- Basepair signature
- cWW-tSH-tWH-cSH-cHW-cWH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
9AZN|1|L5|C|3660
9AZN|1|L5|G|3661
9AZN|1|L5|A|3662
9AZN|1|L5|A|3663
9AZN|1|L5|G|3664
9AZN|1|L5|G|3665
*
9AZN|1|L5|U|3677
9AZN|1|L5|G|3678
9AZN|1|L5|U|3679
9AZN|1|L5|U|3680
9AZN|1|L5|G|3681
9AZN|1|L5|A|3682
9AZN|1|L5|C|3683
9AZN|1|L5|G|3684
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LA
- 60S ribosomal protein L8
- Chain Lp
- 60S ribosomal protein L37a
- Chain S3
- Small subunit ribosomal RNA; SSU rRNA
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