IL_9AZN_123
3D structure
- PDB id
- 9AZN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human A/P-P/E state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- CCAAAUGCCUCG*CGCG
- Length
- 16 nucleotides
- Bulged bases
- 9AZN|1|L5|A|3785, 9AZN|1|L5|C|3791, 9AZN|1|L5|C|3810
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9AZN_123 not in the Motif Atlas
- Homologous match to IL_8CRE_095
- Geometric discrepancy: 0.0781
- The information below is about IL_8CRE_095
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_42218.2
- Basepair signature
- cWW-L-R-cHW-cWW-L-L-L-R-L
- Number of instances in this motif group
- 5
Unit IDs
9AZN|1|L5|C|3781
9AZN|1|L5|C|3782
9AZN|1|L5|A|3783
9AZN|1|L5|A|3784
9AZN|1|L5|A|3785
9AZN|1|L5|U|3786
9AZN|1|L5|G|3787
9AZN|1|L5|C|3788
9AZN|1|L5|C|3789
9AZN|1|L5|U|3790
9AZN|1|L5|C|3791
9AZN|1|L5|G|3792
*
9AZN|1|L5|C|3808
9AZN|1|L5|G|3809
9AZN|1|L5|C|3810
9AZN|1|L5|G|3811
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain AP
- Transfer RNA; tRNA
- Chain Ln
- 60S ribosomal protein L41
- Chain S3
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: