IL_9AZN_125

3D structure

PDB id

9AZN (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human A/P-P/E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

GAA*UACC

Length

7 nucleotides

Bulged bases

9AZN|1|L5|A|3901, 9AZN|1|L5|C|4560

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9AZN_125 not in the Motif Atlas

Homologous match to IL_8CRE_097

Geometric discrepancy: 0.0792

The information below is about IL_8CRE_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83389.2

Basepair signature

cWW-cWW

Number of instances in this motif group

5

Unit IDs

9AZN|1|L5|G|3900
9AZN|1|L5|A|3901
9AZN|1|L5|A|3902
*
9AZN|1|L5|U|4558
9AZN|1|L5|A|4559
9AZN|1|L5|C|4560
9AZN|1|L5|C|4561

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LP

60S ribosomal protein L17