IL_9AZN_139

3D structure

PDB id

9AZN (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human A/P-P/E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

9AZN|1|L5|U|4437

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9AZN_139 not in the Motif Atlas

Homologous match to IL_8CRE_113

Geometric discrepancy: 0.1803

The information below is about IL_8CRE_113

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

9AZN|1|L5|G|4405
9AZN|1|L5|U|4406
9AZN|1|L5|G|4407
*
9AZN|1|L5|U|4435
9AZN|1|L5|U|4436
9AZN|1|L5|U|4437
9AZN|1|L5|U|4438
9AZN|1|L5|U|4439

Current chains

Chain L5

28S rRNA

Nearby chains

Chain AP

Transfer RNA; tRNA

Chain LB

Large ribosomal subunit protein uL3

Chain LI

60S ribosomal protein L10-like [Homo sapiens]