IL_9AZN_193

3D structure

PDB id

9AZN (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human A/P-P/E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

GCUCCUCUCCCACUU*AUGCCGAC

Length

23 nucleotides

Bulged bases

9AZN|1|S3|C|131, 9AZN|1|S3|U|132, 9AZN|1|S3|C|133, 9AZN|1|S3|C|134, 9AZN|1|S3|U|135, 9AZN|1|S3|C|136, 9AZN|1|S3|U|137, 9AZN|1|S3|C|138, 9AZN|1|S3|C|139, 9AZN|1|S3|C|142, 9AZN|1|S3|U|143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9AZN|1|S3|G|130
9AZN|1|S3|C|131
9AZN|1|S3|U|132
9AZN|1|S3|C|133
9AZN|1|S3|C|134
9AZN|1|S3|U|135
9AZN|1|S3|C|136
9AZN|1|S3|U|137
9AZN|1|S3|C|138
9AZN|1|S3|C|139
9AZN|1|S3|C|140
9AZN|1|S3|A|141
9AZN|1|S3|C|142
9AZN|1|S3|U|143
9AZN|1|S3|U|144
*
9AZN|1|S3|A|175
9AZN|1|S3|U|176
9AZN|1|S3|G|177
9AZN|1|S3|C|178
9AZN|1|S3|C|179
9AZN|1|S3|G|180
9AZN|1|S3|A|181
9AZN|1|S3|C|182

Current chains

Chain S3

18S rRNA

Nearby chains

Chain SG

40S ribosomal protein S6