IL_9AZN_246
3D structure
- PDB id
- 9AZN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human A/P-P/E state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- CG*CAG
- Length
- 5 nucleotides
- Bulged bases
- 9AZN|1|S3|A|1489
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9AZN_246 not in the Motif Atlas
- Homologous match to IL_8CRE_455
- Geometric discrepancy: 0.1162
- The information below is about IL_8CRE_455
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_14190.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 134
Unit IDs
9AZN|1|S3|C|1337
9AZN|1|S3|G|1338
*
9AZN|1|S3|C|1488
9AZN|1|S3|A|1489
9AZN|1|S3|G|1490
Current chains
- Chain S3
- 18S rRNA
Nearby chains
- Chain AP
- Transfer RNA; tRNA
- Chain SC
- 40S ribosomal protein S2
- Chain SD
- Small ribosomal subunit protein uS3
- Chain SQ
- Small ribosomal subunit protein uS9
- Chain SU
- 40S ribosomal protein S20
- Chain Sd
- 40S ribosomal protein S29
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