3D structure

PDB id
9AZN (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human A/P-P/E state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.98 Å

Loop

Sequence
GCUCAGCGUG*CCGUUGAACCC
Length
21 nucleotides
Bulged bases
9AZN|1|S3|U|1585, 9AZN|1|S3|G|1587
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9AZN|1|S3|G|1541
9AZN|1|S3|C|1542
9AZN|1|S3|U|1543
9AZN|1|S3|C|1544
9AZN|1|S3|A|1545
9AZN|1|S3|G|1546
9AZN|1|S3|C|1547
9AZN|1|S3|G|1548
9AZN|1|S3|U|1549
9AZN|1|S3|G|1550
*
9AZN|1|S3|C|1582
9AZN|1|S3|C|1583
9AZN|1|S3|G|1584
9AZN|1|S3|U|1585
9AZN|1|S3|U|1586
9AZN|1|S3|G|1587
9AZN|1|S3|A|1588
9AZN|1|S3|A|1589
9AZN|1|S3|C|1590
9AZN|1|S3|C|1591
9AZN|1|S3|C|1592

Current chains

Chain S3
18S rRNA

Nearby chains

Chain SD
Small ribosomal subunit protein uS3
Chain SF
40S ribosomal protein S5
Chain SQ
Small ribosomal subunit protein uS9
Chain ST
40S ribosomal protein S19
Chain SU
40S ribosomal protein S20
Chain SZ
Small ribosomal subunit protein eS25
Chain Sd
40S ribosomal protein S29

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