IL_9AZN_264

3D structure

PDB id

9AZN (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human A/P-P/E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

UUG*CUA

Length

6 nucleotides

Bulged bases

9AZN|1|S3|U|1721, 9AZN|1|S3|U|1812

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9AZN_264 not in the Motif Atlas

Homologous match to IL_8P9A_458

Geometric discrepancy: 0.195

The information below is about IL_8P9A_458

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

9AZN|1|S3|U|1720
9AZN|1|S3|U|1721
9AZN|1|S3|G|1722
*
9AZN|1|S3|C|1811
9AZN|1|S3|U|1812
9AZN|1|S3|A|1813

Current chains

Chain S3

18S rRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain LV

60S ribosomal protein L23

Chain Ln

60S ribosomal protein L41

Chain SX

40S ribosomal protein S23