IL_9AZS_024

3D structure

PDB id

9AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Post-eEF1A-AT-P-E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGUC*GC

Length

6 nucleotides

Bulged bases

9AZS|1|L5|G|483, 9AZS|1|L5|U|484

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9AZS_024 not in the Motif Atlas

Geometric match to IL_8SP9_001

Geometric discrepancy: 0.1918

The information below is about IL_8SP9_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

9AZS|1|L5|G|482
9AZS|1|L5|G|483
9AZS|1|L5|U|484
9AZS|1|L5|C|485
*
9AZS|1|L5|G|671
9AZS|1|L5|C|672

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Lr

60S ribosomal protein L28