IL_9AZS_038

3D structure

PDB id

9AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Post-eEF1A-AT-P-E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

9AZS|1|L5|G|748, 9AZS|1|L5|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9AZS_038 not in the Motif Atlas

Geometric match to IL_8CRE_022

Geometric discrepancy: 0.1466

The information below is about IL_8CRE_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_43858.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

9AZS|1|L5|G|745
9AZS|1|L5|A|746
9AZS|1|L5|A|747
9AZS|1|L5|G|748
9AZS|1|L5|G|749
9AZS|1|L5|U|750
9AZS|1|L5|G|751
9AZS|1|L5|G|752
*
9AZS|1|L5|U|911
9AZS|1|L5|G|912
9AZS|1|L5|U|913
9AZS|1|L5|U|914
9AZS|1|L5|A|915
9AZS|1|L5|C|916
9AZS|1|L5|A|917
9AZS|1|L5|G|918
9AZS|1|L5|C|919

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LM

60S ribosomal protein L14

Chain LS

60S ribosomal protein L18a