IL_9AZS_199

3D structure

PDB id

9AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Post-eEF1A-AT-P-E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUGAC*GGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9AZS_199 not in the Motif Atlas

Geometric match to IL_7A0S_087

Geometric discrepancy: 0.3383

The information below is about IL_7A0S_087

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

9AZS|1|S2|C|188
9AZS|1|S2|U|189
9AZS|1|S2|G|190
9AZS|1|S2|A|191
9AZS|1|S2|C|192
*
9AZS|1|S2|G|207
9AZS|1|S2|G|208
9AZS|1|S2|A|209
9AZS|1|S2|U|210
9AZS|1|S2|G|211

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SI

40S ribosomal protein S8