IL_9B00_004
3D structure
- PDB id
- 9B00 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with berberine analog of chloramphenicol CAM-BER, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.80A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GGGAG*CGUGGAUC
- Length
- 13 nucleotides
- Bulged bases
- 9B00|1|1A|G|100
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9B00_004 not in the Motif Atlas
- Homologous match to IL_8VTW_004
- Geometric discrepancy: 0.0715
- The information below is about IL_8VTW_004
- Detailed Annotation
- Kink-turn
- Broad Annotation
- Kink-turn
- Motif group
- IL_45067.5
- Basepair signature
- cWW-tSH-tSS-tHS-R-cWW-cWW-R
- Number of instances in this motif group
- 16
Unit IDs
9B00|1|1A|G|81
9B00|1|1A|G|82
9B00|1|1A|G|83
9B00|1|1A|A|84
9B00|1|1A|G|85
*
9B00|1|1A|C|97
9B00|1|1A|G|98
9B00|1|1A|U|99
9B00|1|1A|G|100
9B00|1|1A|G|102
9B00|1|1A|A|103
9B00|1|1A|U|104
9B00|1|1A|C|105
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 12
- 50S ribosomal protein L29
- Chain 1Y
- 50S ribosomal protein L24
Coloring options: