IL_9B00_007

3D structure

PDB id

9B00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with berberine analog of chloramphenicol CAM-BER, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B00_007 not in the Motif Atlas

Homologous match to IL_8VTW_007

Geometric discrepancy: 0.0586

The information below is about IL_8VTW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

9B00|1|1A|U|239
9B00|1|1A|G|240
9B00|1|1A|A|241
9B00|1|1A|G|242
9B00|1|1A|U|243
9B00|1|1A|A|244
9B00|1|1A|G|245
*
9B00|1|1A|C|253
9B00|1|1A|G|254
9B00|1|1A|A|255
9B00|1|1A|A|256
9B00|1|1A|A|257
9B00|1|1A|G|258

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 18

50S ribosomal protein L35

Chain 1P

50S ribosomal protein L15