IL_9B00_047

3D structure

PDB id

9B00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with berberine analog of chloramphenicol CAM-BER, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

9B00|1|1A|U|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B00_047 not in the Motif Atlas

Homologous match to IL_8VTW_046

Geometric discrepancy: 0.0545

The information below is about IL_8VTW_046

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.5

Basepair signature

cWW-cWW-tSS-tSH-tHS-cWW-tHS

Number of instances in this motif group

32

Unit IDs

9B00|1|1A|C|1208
9B00|1|1A|G|1209
9B00|1|1A|A|1210
9B00|1|1A|U|1211
9B00|1|1A|G|1212
9B00|1|1A|A|1213
9B00|1|1A|A|1214
9B00|1|1A|G|1215
*
9B00|1|1A|U|1234
9B00|1|1A|G|1235
9B00|1|1A|G|1236
9B00|1|1A|A|1237
9B00|1|1A|G|1238

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1U

50S ribosomal protein L20