IL_9B00_063

3D structure

PDB id

9B00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with berberine analog of chloramphenicol CAM-BER, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGAAG*UGACAAC

Length

12 nucleotides

Bulged bases

9B00|1|1A|C|1543

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B00_063 not in the Motif Atlas

Homologous match to IL_8VTW_062

Geometric discrepancy: 0.0753

The information below is about IL_8VTW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80287.1

Basepair signature

cWW-tSH-tHH-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

9B00|1|1A|G|1526
9B00|1|1A|G|1527
9B00|1|1A|A|1528
9B00|1|1A|A|1528|||A
9B00|1|1A|G|1529
*
9B00|1|1A|U|1540
9B00|1|1A|G|1541
9B00|1|1A|A|1542
9B00|1|1A|C|1543
9B00|1|1A|A|1544
9B00|1|1A|A|1545
9B00|1|1A|C|1546

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains